List of Super Smash Bros. for Nintendo 3DS glitches

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During Bowser Jr.'s Final Smash, the player must use the Clown Cannon just as it ends. If done correctly, Bowser Jr. can use his Final Smash a second time. This will not work if this has been used, but it will at another point in battle.

(removed in Version 1.0.4)
While playing as Yoshi in Multi-Man Smash, when Yoshi faces a giant rival, the player can continuously use their neutral special, Egg Lay, to make the opponent larger.

This glitch occurs when playing as Villager against Dr. Mario. If Villager has 100% or more damage, and KOs two Dr. Marios, the chant used for the Ice Climbers in Super Smash Bros. Brawl plays. This glitch occurs only in Japanese copies of the game.

In any match, it is possible to stop the normal music from playing. This is possible by collecting any music-changing item, such as Hammer/Golden Hammer or Starman, one after another. If done right, the normal music will not play anymore.

Pikachu must stand on the top fin of the Corneria, then up-special in the corner where the fin connects to the ship. If done correctly, Pikachu will warp through the ship.

A glitch in the game's banning system has been causing players to be banned from online play for 4,294,967,295 seconds (approximately 136 years).

In some versions of the game, the Villager can get stuck in mid-air if hit by Zoroark while the Back Shield item is equipped. The villager returns to normal if hit again from any attack.

If one were to spawn Victini out of a Pokéball on the 3D Land stage and fly to different area while Victini's effects are still in place, the player can become invincible.

In some versions of the game, when you are fighting against The Fighting Mii Team, some of them will not have a head. This glitch was fixed in later versions of the game.

In Mute City, if is held while falling off-stage onto the road, no damage will be taken. However, the character may be carried off-screen after a while and subsequently be KO'd.

In Distant Planet, if Bowser uses his Final Smash to transform into Giga Bowser, jumping into the Red Bulborb will not KO the player as usual, but instead, cause Bowser to clip through the top of the creature. The glitch ends if Bowser jumps away, or the Final Smash runs out, in which Bowser will be immediately KO'd as usual.

On the Street Pass Quest/Find Mii stage, if Mr. Game & Watch defeats the Dark Emperor while performing his final smash, Mr.Game & Watch will not receive a power up upon finishing his final smash.